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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_714560_714989_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
714560 - 714989
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
CATCCCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTCATC
Flanking Amino Acid:
DFVVVILSIAGIVLSDIIEK
Intron Amino Acid Position:
1370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
75.3
40.8
Major BPS
100
1.24
0.5
100
0
Major PPT
79.4
0.66
0.8
72.8
31.5
Minor 5ss
40.5
-1.1
3.1
57.5
46.7
Minor BPS
57.4
0.21
1.7
68.66
38.1

Associated Gene:

Gene:
SCN4A
Ensembl Gene ID:
ENSAPLG00000004906
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005205
683340 - 716182
32843