About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_723535_723837_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
723535 - 723837
Intron Length:
303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
TCTTCTCTATAG
Flanking Amino Acid:
SVPMLLFLDKGEGKESPEED
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
81.1
0.7
0.7
76.4
25.9
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
46.7
-0.3
2
56.98
44.6

Associated Gene:

Gene:
CD79B
Ensembl Gene ID:
ENSAPLG00000004879
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005040
720298 - 724269
3972