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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_735237_735745_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
735237 - 735745
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGGGC
5'SS Class:
major
3'SS Sequence:
GTCTTCCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTTAATTAATT
Flanking Amino Acid:
FNGWSSRIITLQNVSGFDDE
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
64.8
41.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
71.8
0.49
0.9
66.5
34.5
Minor 5ss
30.1
-2.3
3.5
41.6
45.3
Minor BPS
64.5
0.53
1.8
82.17
39.2

Associated Gene:

Gene:
RDM1
Ensembl Gene ID:
ENSAPLG00000004384
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004535
733202 - 739812
6611