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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_735909_736487_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
735909 - 736487
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGGTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATCTTAATA
Flanking Amino Acid:
LGEADIENSEDPLEFVTATR
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
81.4
33.4
Major BPS
100
1.24
0.5
100
0
Major PPT
72.7
0.51
1
68.8
42.1
Minor 5ss
44.4
-0.6
3.2
67
44.3
Minor BPS
72
0.69
1.2
75.33
36.5

Associated Gene:

Gene:
RDM1
Ensembl Gene ID:
ENSAPLG00000004384
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004535
733202 - 739812
6611