Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_736587_738119_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

736587 - 738119

Intron Length:

1533

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGGCCT

5'SS Class:

strong_major

3'SS Sequence:

GTGCTTATTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

GTGTGCTTATTT

Flanking Amino Acid:

AFQKILLVVLENGKVAVEYN

Intron Amino Acid Position:

218

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.92

0.9

76.1

39.5

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

77.2

0.61

0.9

40.4

Minor 5ss

33.4

-1.9

3.4

48.4

47.3

Minor BPS

53.1

0.17

72.26

45.1

Associated Gene:

Gene:

RDM1

Ensembl Gene ID:

ENSAPLG00000004384

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004535

733202 - 739812

6611