Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_755802_756694_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

755802 - 756694

Intron Length:

893

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCAGA

5'SS Class:

strong_major

3'SS Sequence:

TCTCCTTGACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

CTCTCCTTGACC

Flanking Amino Acid:

INLTVICLIEVCSQKPAAAS

Intron Amino Acid Position:

486

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

74.1

38.4

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

71.3

0.48

65.8

39.7

Minor 5ss

33.3

-1.9

2.8

45.7

Minor BPS

77.5

0.85

1.2

77.61

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016599

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027945

754207 - 759014

4808