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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_767503_767612_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
767503 - 767612
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
CTCCATTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
GCCACCTTCACC
Flanking Amino Acid:
LTPCSPMEQRPPTPEADYPD
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
65.8
40.2
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
73.2
0.52
0.8
64.7
36.1
Minor 5ss
34.8
-1.7
2.8
36.3
40.5
Minor BPS
53.5
0.09
1.9
59.59
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004111
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004226
762805 - 768903
6099