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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_768283_768390_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
768283 - 768390
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CCTGAATTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAAAAAA
U12 Branch Point Sequence:
TGTGCCTGAATT
Flanking Amino Acid:
PAALGLKEEKFKSLDKAGVL
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
44.4
-0.3
1.1
45.6
33.7
Major PPT
72.3
0.5
1
61.7
43.3
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
67.7
0.63
1.5
81.73
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004111
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004226
762805 - 768903
6099