Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_772781_773000_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

772781 - 773000

Intron Length:

220

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGTGGCA

5'SS Class:

major

3'SS Sequence:

TCCCCAGCGGGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCCCCAG

U12 Branch Point Sequence:

CTGTCCCCAGCG

Flanking Amino Acid:

ALLWMDTLQQHLLKQFLVQS

Intron Amino Acid Position:

899

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.8

0.35

1.1

55.6

37.4

Major BPS

44.4

-0.3

1.6

54.3

42.9

Major PPT

44.9

-0.2

1.7

46.2

35.5

Minor 5ss

22.7

-3.1

3.4

29.7

43.3

Minor BPS

44.3

-0.5

2.1

52.38

47.7

Associated Gene:

Gene:

ITGA2B

Ensembl Gene ID:

ENSAPLG00000003235

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003373

772393 - 779107

6715