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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_773682_773790_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
773682 - 773790
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGGTC
5'SS Class:
major
3'SS Sequence:
TGCTGCCCACGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGGAAAT
U12 Branch Point Sequence:
CTGCCCACCACC
Flanking Amino Acid:
VEAQAAMELRGWHGAEGSRR
Intron Amino Acid Position:
730

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
67.3
38.4
Major BPS
47.3
-0.1
1.3
50.8
41.5
Major PPT
47.1
-0.1
1.7
48.1
40.5
Minor 5ss
27.9
-2.5
3.5
32.4
42.7
Minor BPS
42.3
-0.6
2.1
52.99
44.2

Associated Gene:

Gene:
ITGA2B
Ensembl Gene ID:
ENSAPLG00000003235
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003373
772393 - 779107
6715