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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_774234_774336_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
774234 - 774336
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
GGTGCCACCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
ACGTCCCCACCA
Flanking Amino Acid:
YYQKALSNIQGQEKLSCIPR
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
60.3
0.23
1
51.7
37.9
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
44.2
-0.4
2.1
54.58
44

Associated Gene:

Gene:
ITGA2B
Ensembl Gene ID:
ENSAPLG00000003235
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003373
772393 - 779107
6715