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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_775860_775936_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
775860 - 775936
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
ACCCGTGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGACAC
U12 Branch Point Sequence:
GTCCCTTGACAC
Flanking Amino Acid:
AFGADKVAVYWGQPVVVARA
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
57.7
0.19
1.2
66.7
40
Major PPT
60.8
0.24
0.9
53.2
36
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
43.9
-0.4
1.7
50.64
39.7

Associated Gene:

Gene:
ITGA2B
Ensembl Gene ID:
ENSAPLG00000003235
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003373
772393 - 779107
6715