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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_776245_776479_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
776245 - 776479
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCACG
5'SS Class:
major
3'SS Sequence:
CCTGCGTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
CCTGCGTCCACA
Flanking Amino Acid:
LGDLDKDGYGDVAVGAPFGG
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
62.7
43.4
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
67.8
0.4
0.9
60
35.5
Minor 5ss
34.7
-1.7
2.8
42
44.3
Minor BPS
39.5
-0.8
2.5
50.44
47.1

Associated Gene:

Gene:
ITGA2B
Ensembl Gene ID:
ENSAPLG00000003235
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003373
772393 - 779107
6715