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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_787092_796211_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
787092 - 796211
Intron Length:
9120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TTTGTCTGATCC
Flanking Amino Acid:
INSYDHAHKQRLKDLKQREF
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
81.8
0.72
0.8
80.6
31.5
Minor 5ss
36.8
-1.5
2.9
51.6
44.9
Minor BPS
54.3
0.11
1.8
70.59
40.9

Associated Gene:

Gene:
GPATCH8
Ensembl Gene ID:
ENSAPLG00000003095
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039506
780344 - 812985
32642
ENSAPLT00000026642
782680 - 811957
29278
ENSAPLT00000020446
780344 - 803000
22657
ENSAPLT00000003147
782757 - 811957
29201