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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_800375_800834_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
800375 - 800834
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
MGMGRMEMELDYAEDATER
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.8
38.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.3
0.84
0.9
89.9
23.6
Minor 5ss
47.5
-0.2
2.8
64.1
47.4
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
GPATCH8
Ensembl Gene ID:
ENSAPLG00000003095
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003147
782757 - 811957
29201
ENSAPLT00000039506
780344 - 812985
32642
ENSAPLT00000026642
782680 - 811957
29278
ENSAPLT00000020446
780344 - 803000
22657