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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_860731_862429_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
860731 - 862429
Intron Length:
1699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
TTAAAGGTAACT
Flanking Amino Acid:
EASIGILHSIVKRDVQENDE
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
83.8
0.76
0.8
76.9
37.3
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
43.6
-0.4
2.7
70.66
45.6

Associated Gene:

Gene:
PSMD11
Ensembl Gene ID:
ENSAPLG00000002804
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002860
860640 - 880051
19412