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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_862532_867704_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
862532 - 867704
Intron Length:
5173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGTTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATGACT
Flanking Amino Acid:
SLLAKTGQAEELGGLLKYVR
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.5
0.69
0.8
75.7
32.7
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
67.6
0.64
1.6
84.88
35

Associated Gene:

Gene:
PSMD11
Ensembl Gene ID:
ENSAPLG00000002804
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002860
860640 - 880051
19412