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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_870799_871158_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
870799 - 871158
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CTTTCCTCACAG
Flanking Amino Acid:
KRTFLRQALEARLVSLYFDT
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
80.1
28.4
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
84.7
0.78
0.8
76.9
37.3
Minor 5ss
46.6
-0.3
2.5
60.6
44.5
Minor BPS
49.4
-0.1
2
60.81
46.6

Associated Gene:

Gene:
PSMD11
Ensembl Gene ID:
ENSAPLG00000002804
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002860
860640 - 880051
19412