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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_874080_874335_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
874080 - 874335
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTACGTGGC
5'SS Class:
major
3'SS Sequence:
TTCCCCTCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
TGTTGAATAGAT
Flanking Amino Acid:
YMLLCKIMLNIPEDVQALVS
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
64.7
40.8
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
77.4
0.62
0.7
69.8
31
Minor 5ss
34.4
-1.8
3.5
47.3
42.1
Minor BPS
40.4
-0.6
2.3
64.73
44.7

Associated Gene:

Gene:
PSMD11
Ensembl Gene ID:
ENSAPLG00000002804
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002860
860640 - 880051
19412