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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_877374_878492_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
877374 - 878492
Intron Length:
1119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
GCTTCAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGCTTCAATT
Flanking Amino Acid:
HISSLIKLSKADVERKLSQM
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.2
0.57
0.9
70.8
38.8
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
66.6
0.6
1.6
83.73
37.9

Associated Gene:

Gene:
PSMD11
Ensembl Gene ID:
ENSAPLG00000002804
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002860
860640 - 880051
19412