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Intron Name: Anas_platyrhynchos_platyrhynchos_28_878545_879521_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

878545 - 879521

Intron Length:

977

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

TTTGTGTCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTTAC

U12 Branch Point Sequence:

GTAACCGCAGCT

Flanking Amino Acid:

SQMILDKKFHGILDQGEGVL

Intron Amino Acid Position:

376

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

70.5

41.3

Major BPS

53.7

0.09

1.4

49.1

Major PPT

78.6

0.64

0.9

73.2

37.2

Minor 5ss

32.5

-2

38.1

40.9

Minor BPS

42.7

-0.4

2.3

63.22

Associated Gene:

Gene:

PSMD11

Ensembl Gene ID:

ENSAPLG00000002804

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002860

860640 - 880051

19412