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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_887869_888809_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
887869 - 888809
Intron Length:
941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
GTTGCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TATTCTTTCATT
Flanking Amino Acid:
EKGRLLIGLDRGIAHANRSI
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
60.6
38.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
82.6
0.73
0.9
76
38
Minor 5ss
32.6
-2
3.3
43.1
44.2
Minor BPS
68.6
0.67
1.7
84.68
36.4

Associated Gene:

Gene:
CDK5R1
Ensembl Gene ID:
ENSAPLG00000020487
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033116
886982 - 888966
1985