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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_949083_954350_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
949083 - 954350
Intron Length:
5268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TTTCTCTTCACA
Flanking Amino Acid:
KVMKTIPLYNLIGLSVSNGK
Intron Amino Acid Position:
887

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
70.2
0.5
1
72.1
33
Major PPT
88
0.86
0.6
83.6
24.7
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
67.6
0.55
1.7
80.35
35.4

Associated Gene:

Gene:
MYO1D
Ensembl Gene ID:
ENSAPLG00000005131
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041476
946819 - 1012777
65959
ENSAPLT00000023026
890864 - 1048509
157646
ENSAPLT00000005349
892226 - 1014247
122022