About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_965616_981374_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
965616 - 981374
Intron Length:
15759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTT
5'SS Class:
strong_major
3'SS Sequence:
CACTGACTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTGCTAAAACT
Flanking Amino Acid:
LVRIVLFLQKVWRGTLARLR
Intron Amino Acid Position:
691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
62.6
0.28
0.9
58.6
37
Minor 5ss
36
-1.6
3.6
55.8
48.4
Minor BPS
49.8
0.06
2
74.84
42.2

Associated Gene:

Gene:
MYO1D
Ensembl Gene ID:
ENSAPLG00000005131
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041476
946819 - 1012777
65959
ENSAPLT00000023026
890864 - 1048509
157646
ENSAPLT00000005349
892226 - 1014247
122022