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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1034256_1034846_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1034256 - 1034846
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
CAGCACTGAACT
Flanking Amino Acid:
FAFHSGFTAQPLYEGWFLAL
Intron Amino Acid Position:
927

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
75.1
0.62
1
65.6
41
Major PPT
81.3
0.7
0.7
73.8
31.3
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
49.9
0.08
1.7
64.99
44.6

Associated Gene:

Gene:
ATP8B3
Ensembl Gene ID:
ENSAPLG00000012087
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012667
1021039 - 1037084
16046