About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1119286_1125309_R

Intron Information:

Intron Rank:
151736
Intron Class:
major
Intron Phase:
Intron Coordinates:
1119286 - 1125309
Intron Length:
6024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAGGTTTC
5'SS Class:
major
3'SS Sequence:
TCTCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTCTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.1
67.3
39.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87
0.83
0.7
82.8
25.8
Minor 5ss
45.6
-0.5
3.1
66.2
39.2
Minor BPS
55.6
0.17
1.7
67.58
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029199
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019510
1117949 - 1125344
7396