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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1119286_1126500_R

Intron Information:

Intron Rank:
151737
Intron Class:
major
Intron Phase:
Intron Coordinates:
1119286 - 1126500
Intron Length:
7215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGAG
5'SS Class:
major
3'SS Sequence:
TCTCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTCTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
66
40.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87
0.83
0.7
82.8
25.8
Minor 5ss
33.3
-1.9
3.2
36.6
41.6
Minor BPS
55.6
0.17
1.7
67.58
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029199
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033749
1117949 - 1127002
9054