Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1174364_1175011_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1174364 - 1175011

Intron Length:

648

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAAGAGCT

5'SS Class:

major

3'SS Sequence:

TCTCTTGCTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

GCGCTGCTGACT

Flanking Amino Acid:

GDALGKALASIYSPDHSSNN

Intron Amino Acid Position:

292

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.1

0.52

66.6

37.3

Major BPS

66.3

0.4

1.1

41.8

Major PPT

0.7

0.8

72.9

37.4

Minor 5ss

35.3

-1.7

3.5

54.4

43.3

Minor BPS

40.2

-0.6

2.2

53.28

42.1

Associated Gene:

Gene:

TCF3

Ensembl Gene ID:

ENSAPLG00000001939

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044569

1141534 - 1184951

43418

ENSAPLT00000002408

1141534 - 1184951

43418