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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1178365_1179318_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1178365 - 1179318
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCTCTTT
5'SS Class:
major
3'SS Sequence:
TTTAAACCATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTAAACC
Flanking Amino Acid:
KELKPSRNRTSQDEDEEDDL
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.1
67.9
39.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
63.8
0.31
1
61.6
39.8
Minor 5ss
43.3
-0.7
3.3
64.7
46.6
Minor BPS
64.6
0.44
1.6
74.26
36.7

Associated Gene:

Gene:
TCF3
Ensembl Gene ID:
ENSAPLG00000001939
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002408
1141534 - 1184951
43418