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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1182543_1183070_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1182543 - 1183070
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGGCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAG
U12 Branch Point Sequence:
GTTTTTGGCATA
Flanking Amino Acid:
VILGLEQQVRERNLNPKAAC
Intron Amino Acid Position:
576

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
46.8
-0.2
1.6
43
41.8
Major PPT
68.8
0.42
1
64.7
41.4
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
40.2
-0.7
2.3
55.65
38.2

Associated Gene:

Gene:
TCF3
Ensembl Gene ID:
ENSAPLG00000001939
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044569
1141534 - 1184951
43418