Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1183216_1183951_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

3UTR

Intron Coordinates:

1183216 - 1183951

Intron Length:

736

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTGTTC

5'SS Class:

major

3'SS Sequence:

GTTTTGTTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTTTTCTCATTT

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

1.1

68.4

37.2

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

0.72

0.8

77.2

37.1

Minor 5ss

47.4

-0.2

67.5

43.9

Minor BPS

62.3

0.47

1.8

83.64

37.8

Associated Gene:

Gene:

TCF3

Ensembl Gene ID:

ENSAPLG00000001939

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044569

1141534 - 1184951

43418

ENSAPLT00000002408

1141534 - 1184951

43418