About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1193517_1194761_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1193517 - 1194761
Intron Length:
1245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
CTCTCTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
CCTCTCTTCTTT
Flanking Amino Acid:
GPRYAQLLQNWTPTLFTWGG
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
81.8
0.72
0.7
80.8
24.5
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
37.5
-0.8
3.4
59.89
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000981
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000964
1193467 - 1194882
1416