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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1208228_1212394_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1208228 - 1212394
Intron Length:
4167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
TACGTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCTTTTCTACGT
Flanking Amino Acid:
PSKAALVREVSPSGKKFRSK
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83
0.74
0.8
80.5
36.8
Minor 5ss
37
-1.5
3.2
50.1
46.5
Minor BPS
45.4
-0.2
2.1
67.08
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003384
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003447
1208056 - 1218313
10258