About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1212555_1213717_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1212555 - 1213717
Intron Length:
1163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTGAAATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTGTTTTGAAAT
Flanking Amino Acid:
MRYDCSNQAKGKPDLNTALP
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
29.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
69.6
0.44
1
63
42.8
Minor 5ss
35.7
-1.6
3.5
47.5
42.5
Minor BPS
61
0.42
1.5
77.49
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003384
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044336
1206960 - 1218313
11354
ENSAPLT00000003447
1208056 - 1218313
10258