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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1213856_1216184_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1213856 - 1216184
Intron Length:
2329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGATGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CTTTCTTTGATG
Flanking Amino Acid:
PQKAVDQPRQLFWEKKLSGL
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
84
0.85
0.9
75
39.9
Major PPT
74.3
0.55
1
73.7
40.5
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
69.7
0.47
1.3
69.68
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003384
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003447
1208056 - 1218313
10258
ENSAPLT00000044336
1206960 - 1218313
11354