Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1216276_1216728_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1216276 - 1216728

Intron Length:

453

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATCAGA

5'SS Class:

major

3'SS Sequence:

CTCCGGCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

CCATGCTGATTG

Flanking Amino Acid:

KTMDLPKGLQGVGPGCTDET

Intron Amino Acid Position:

161

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

70.8

41.1

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

72.3

0.5

0.9

64.5

36.5

Minor 5ss

38.8

-1.3

2.8

49.6

46.2

Minor BPS

40.9

-0.8

40.33

44.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003384

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044336

1206960 - 1218313

11354

ENSAPLT00000003447

1208056 - 1218313

10258