Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1233783_1234187_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1233783 - 1234187

Intron Length:

405

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGCCT

5'SS Class:

strong_major

3'SS Sequence:

TTTGGGTTCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCAGAA

U12 Branch Point Sequence:

TTTGGGTTCACA

Flanking Amino Acid:

AKDATSDNGKDGLAYSALLK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.7

0.82

0.9

72.1

39.1

Major BPS

64.9

0.37

37.5

Major PPT

75.1

0.56

68.1

42.3

Minor 5ss

27.9

-2.5

3.2

39.3

46.1

Minor BPS

43.8

-0.4

2.8

66.36

46.4

Associated Gene:

Gene:

FZR1

Ensembl Gene ID:

ENSAPLG00000005845

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030795

1231149 - 1240695

9547

ENSAPLT00000006105

1231955 - 1240247

8293