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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1238405_1239240_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1238405 - 1239240
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTGCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
AGATCCTAAAGG
Flanking Amino Acid:
TGHSYRVLYLAMSPDGEAIV
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.5
38.5
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
75.1
0.56
0.8
72.7
32.1
Minor 5ss
40.8
-1
2.8
50.5
40
Minor BPS
49.3
-0.1
2
55.41
45.4

Associated Gene:

Gene:
FZR1
Ensembl Gene ID:
ENSAPLG00000005845
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030795
1231149 - 1240695
9547