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Intron Name: Anas_platyrhynchos_platyrhynchos_29_1277389_1277793_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1277389 - 1277793

Intron Length:

405

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAGCC

5'SS Class:

strong_major

3'SS Sequence:

CTCCTCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTCAC

U12 Branch Point Sequence:

CAGTCCTCACCT

Flanking Amino Acid:

MLLRQQLQVTGDATESTDDI

Intron Amino Acid Position:

544

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

69.2

36.8

Major BPS

72.4

0.56

73.5

32.5

Major PPT

79.2

0.66

0.7

73.1

25.2

Minor 5ss

30.3

-2.3

3.5

Minor BPS

0.17

1.9

69.22

47.2

Associated Gene:

Gene:

CACTIN

Ensembl Gene ID:

ENSAPLG00000005461

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005645

1276704 - 1290756

14053