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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1278063_1278211_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1278063 - 1278211
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAGC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CCGTCTCCATCC
Flanking Amino Acid:
IKREPVSPSDRLDPEESLVV
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.8
42.3
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
80
0.68
0.8
73.7
31.3
Minor 5ss
45.8
-0.4
2.6
60.7
44
Minor BPS
40.9
-0.7
2
46.47
43

Associated Gene:

Gene:
CACTIN
Ensembl Gene ID:
ENSAPLG00000005461
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005645
1276704 - 1290756
14053