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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1278335_1278660_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1278335 - 1278660
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCG
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAT
U12 Branch Point Sequence:
TGTGACCTGATG
Flanking Amino Acid:
QQLKAYMARARLRERHQDVL
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.6
36.5
Major BPS
70
0.5
1
59.3
39.1
Major PPT
74.6
0.55
0.7
68.5
25.1
Minor 5ss
25.3
-2.8
3.1
30.1
43.1
Minor BPS
44.9
-0.5
2
53
41.9

Associated Gene:

Gene:
CACTIN
Ensembl Gene ID:
ENSAPLG00000005461
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005645
1276704 - 1290756
14053