About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1295031_1295337_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1295031 - 1295337
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTTCTCATCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCTTTCATT
Flanking Amino Acid:
MTNTVFRKNSSLKSSPSKKG
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74
36.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.1
0.79
0.8
78.2
35.3
Minor 5ss
38.9
-1.2
2.7
53.8
42.8
Minor BPS
66.9
0.61
1.7
82.98
39.3

Associated Gene:

Gene:
PIP5K1C
Ensembl Gene ID:
ENSAPLG00000005085
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005275
1140196 - 1303319
163124