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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1296487_1297024_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1296487 - 1297024
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAGGTATC
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTAAATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCTTAAA
U12 Branch Point Sequence:
CTCCCCTTAAAT
Flanking Amino Acid:
VGIIDILQSYRFIKKLEHTW
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
91.8
20.5
Major BPS
65.4
0.38
1.1
67.5
35
Major PPT
59.6
0.22
0.9
59.5
34.5
Minor 5ss
28.6
-2.5
4
44.4
43.7
Minor BPS
69.2
0.68
1.5
78.73
43.1

Associated Gene:

Gene:
PIP5K1C
Ensembl Gene ID:
ENSAPLG00000005085
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005275
1140196 - 1303319
163124