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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1298776_1300900_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1298776 - 1300900
Intron Length:
2125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTATC
5'SS Class:
major
3'SS Sequence:
AACCCCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
CTTTTTCCAACC
Flanking Amino Acid:
LQKLLPGYYMNLNQNPRTLL
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
74
36.6
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
68.3
0.41
0.9
63
37.3
Minor 5ss
33.6
-1.9
3.1
41.6
39.5
Minor BPS
49.9
-0
1.9
66.52
39.4

Associated Gene:

Gene:
PIP5K1C
Ensembl Gene ID:
ENSAPLG00000005085
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005275
1140196 - 1303319
163124