About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1354389_1356049_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1354389 - 1356049
Intron Length:
1661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
GTCACTCTCACT
Flanking Amino Acid:
KVNLPEVRVQVWFQNRRAKW
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.9
37
Major BPS
72.7
0.56
1
75
30.1
Major PPT
70.4
0.46
1
65.8
35.9
Minor 5ss
30.2
-2.3
3.3
38.5
46.8
Minor BPS
46.4
-0.2
2.1
65.88
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017442
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030804
1353945 - 1361369
7425