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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1358122_1360862_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1358122 - 1360862
Intron Length:
2741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
AGGTGCTCACCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.3
34.5
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
82.5
0.73
0.7
76.4
25.6
Minor 5ss
28.3
-2.5
3.1
31.3
36.7
Minor BPS
44.1
-0.4
2.1
53.63
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017442
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030804
1353945 - 1361369
7425