Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1367774_1367882_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1367774 - 1367882

Intron Length:

109

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAC|GTGAGTGCC

5'SS Class:

major

3'SS Sequence:

CGCCTCCTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTGAC

U12 Branch Point Sequence:

ACCCCCTTGACC

Flanking Amino Acid:

QAFLAETAAMTKVRHKNLVR

Intron Amino Acid Position:

240

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

1.3

69.3

35.8

Major BPS

61.6

0.29

1.1

54.6

40.8

Major PPT

76.6

0.6

0.8

72.6

32.1

Minor 5ss

29.9

-2.3

3.1

35.2

33.9

Minor BPS

65.8

0.48

1.3

65.53

40.3

Associated Gene:

Gene:

MATK

Ensembl Gene ID:

ENSAPLG00000003263

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003378

1363510 - 1375228

11719