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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1370645_1373315_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1370645 - 1373315
Intron Length:
2671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCACAG
U12 Branch Point Sequence:
TGTCCCTCCACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
46.5
-0.2
1.5
56.9
40.5
Major PPT
81
0.7
0.7
75.9
26.3
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
54
0.12
2
70.34
41.4

Associated Gene:

Gene:
MATK
Ensembl Gene ID:
ENSAPLG00000003263
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003378
1363510 - 1375228
11719