Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_141119_141214_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

141119 - 141214

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTGCT

5'SS Class:

strong_major

3'SS Sequence:

CCCCCTTTGGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTCAT

U12 Branch Point Sequence:

TGCTGATTAAAC

Flanking Amino Acid:

HHTEDVFGVQLEGAFPDTMT

Intron Amino Acid Position:

371

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

1.1

78.8

35.5

Major BPS

78.3

0.7

0.8

77.7

26.1

Major PPT

66.7

0.38

0.9

31.1

Minor 5ss

40.9

-1

3.2

59.5

Minor BPS

48.2

-0.1

2.1

61.65

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004636

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044914

137831 - 145687

7857

ENSAPLT00000004778

138672 - 145819

7148