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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1414860_1425780_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1414860 - 1425780
Intron Length:
10921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
AGTTCTGGAACT
Flanking Amino Acid:
AAARPCRAPQIYYKMSNGYE
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
52.7
0.16
2.1
76.06
40.4

Associated Gene:

Gene:
ELAVL1
Ensembl Gene ID:
ENSAPLG00000003139
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047490
1414646 - 1453966
39321
ENSAPLT00000031438
1414660 - 1464252
49593
ENSAPLT00000026943
1414660 - 1465403
50744
ENSAPLT00000003195
1414646 - 1453966
39321